5IU0 image
Entry Detail
PDB ID:
5IU0
Keywords:
Title:
Rubisco from Arabidopsis thaliana
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2016-03-17
Release Date:
2017-07-12
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.15
R-Value Work:
0.13
R-Value Observed:
0.14
Space Group:
I 4
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ribulose bisphosphate carboxylase large chain
Chain IDs:A, B
Chain Length:479
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Polymer Type:polypeptide(L)
Description:Ribulose bisphosphate carboxylase small chain 1B, chloroplastic
Chain IDs:C (auth: J), D (auth: I)
Chain Length:181
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
KCX A LYS modified residue
Primary Citation
Structure of Rubisco from Arabidopsis thaliana in complex with 2-carboxyarabinitol-1,5-bisphosphate.
Acta Crystallogr D Struct Biol 74 1 9 (2018)
PMID: 29372894 DOI: 10.1107/S2059798317017132

Abstact

The crystal structure of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from Arabidopsis thaliana is reported at 1.5 Å resolution. In light of the importance of A. thaliana as a model organism for understanding higher plant biology, and the pivotal role of Rubisco in photosynthetic carbon assimilation, there has been a notable absence of an A. thaliana Rubisco crystal structure. A. thaliana Rubisco is an L8S8 hexadecamer comprising eight plastome-encoded catalytic large (L) subunits and eight nuclear-encoded small (S) subunits. A. thaliana produces four distinct small-subunit isoforms (RbcS1A, RbcS1B, RbcS2B and RbcS3B), and this crystal structure provides a snapshot of A. thaliana Rubisco containing the low-abundance RbcS3B small-subunit isoform. Crystals were obtained in the presence of the transition-state analogue 2-carboxy-D-arabinitol-1,5-bisphosphate. A. thaliana Rubisco shares the overall fold characteristic of higher plant Rubiscos, but exhibits an interesting disparity between sequence and structural relatedness to other Rubisco isoforms. These results provide the structural framework to understand A. thaliana Rubisco and the potential catalytic differences that could be conferred by alternative A. thaliana Rubisco small-subunit isoforms.

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Primary Citation of related structures