5INZ image
Deposition Date 2016-03-08
Release Date 2016-04-27
Last Version Date 2024-10-16
Entry Detail
PDB ID:
5INZ
Keywords:
Title:
Racemic structure of baboon theta defensin-2
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.45 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P -1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Theta defensin-2, L-peptide
Chain IDs:A, B, C
Chain Length:18
Number of Molecules:3
Biological Source:Papio anubis
Protein Blast
Polymer Type:polypeptide(D)
Molecule:Theta defensin-2, D-peptide
Chain IDs:D
Chain Length:18
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
Mirror Images of Antimicrobial Peptides Provide Reflections on Their Functions and Amyloidogenic Properties.
J.Am.Chem.Soc. 138 5706 5713 (2016)
PMID: 27064294 DOI: 10.1021/jacs.6b02575

Abstact

Enantiomeric forms of BTD-2, PG-1, and PM-1 were synthesized to delineate the structure and function of these β-sheet antimicrobial peptides. Activity and lipid-binding assays confirm that these peptides act via a receptor-independent mechanism involving membrane interaction. The racemic crystal structure of BTD-2 solved at 1.45 Å revealed a novel oligomeric form of β-sheet antimicrobial peptides within the unit cell: an antiparallel trimer, which we suggest might be related to its membrane-active form. The BTD-2 oligomer extends into a larger supramolecular state that spans the crystal lattice, featuring a steric-zipper motif that is common in structures of amyloid-forming peptides. The supramolecular structure of BTD-2 thus represents a new mode of fibril-like assembly not previously observed for antimicrobial peptides, providing structural evidence linking antimicrobial and amyloid peptides.

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Primary Citation of related structures
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