5INW image
Deposition Date 2016-03-08
Release Date 2016-10-05
Last Version Date 2023-11-08
Entry Detail
PDB ID:
5INW
Keywords:
Title:
Structure of reaction loop cleaved lamprey angiotensinogen
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.27
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative angiotensinogen
Gene (Uniprot):agt
Mutagens:INSERTION OF TWO ALA BETWEEN 416 AND 417, I418R
Chain IDs:A, B
Chain Length:421
Number of Molecules:2
Biological Source:Lampetra fluviatilis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:C-terminal peptide of Putative angiotensinogen
Chain IDs:C, D
Chain Length:35
Number of Molecules:2
Biological Source:Lampetra fluviatilis
Ligand Molecules
Primary Citation
Heparin Binds Lamprey Angiotensinogen and Promotes Thrombin Inhibition through a Template Mechanism
J.Biol.Chem. 291 24900 24911 (2016)
PMID: 27681598 DOI: 10.1074/jbc.M116.725895

Abstact

Lamprey angiotensinogen (l-ANT) is a hormone carrier in the regulation of blood pressure, but it is also a heparin-dependent thrombin inhibitor in lamprey blood coagulation system. The detailed mechanisms on how angiotensin is carried by l-ANT and how heparin binds l-ANT and mediates thrombin inhibition are unclear. Here we have solved the crystal structure of cleaved l-ANT at 2.7 Å resolution and characterized its properties in heparin binding and protease inhibition. The structure reveals that l-ANT has a conserved serpin fold with a labile N-terminal angiotensin peptide and undergoes a typical stressed-to-relaxed conformational change when the reactive center loop is cleaved. Heparin binds l-ANT tightly with a dissociation constant of ∼10 nm involving ∼8 monosaccharides and ∼6 ionic interactions. The heparin binding site is located in an extensive positively charged surface area around helix D involving residues Lys-148, Lys-151, Arg-155, and Arg-380. Although l-ANT by itself is a poor thrombin inhibitor with a second order rate constant of 500 m-1 s-1, its interaction with thrombin is accelerated 90-fold by high molecular weight heparin following a bell-shaped dose-dependent curve. Short heparin chains of 6-20 monosaccharide units are insufficient to promote thrombin inhibition. Furthermore, an l-ANT mutant with the P1 Ile mutated to Arg inhibits thrombin nearly 1500-fold faster than the wild type, which is further accelerated by high molecular weight heparin. Taken together, these results suggest that heparin binds l-ANT at a conserved heparin binding site around helix D and promotes the interaction between l-ANT and thrombin through a template mechanism conserved in vertebrates.

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Primary Citation of related structures
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