5IMV image
Entry Detail
PDB ID:
5IMV
Keywords:
Title:
Xanthomonas campestris Peroxiredoxin Q - Structure F6
Biological Source:
PDB Version:
Deposition Date:
2016-03-07
Release Date:
2016-09-21
Method Details:
Experimental Method:
Resolution:
1.05 Å
R-Value Free:
0.14
R-Value Work:
0.12
R-Value Observed:
0.12
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Bacterioferritin comigratory protein
Chain IDs:A
Chain Length:160
Number of Molecules:1
Biological Source:Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
OCS A CYS modified residue
Primary Citation
Peroxiredoxin Catalysis at Atomic Resolution.
Structure 24 1668 1678 (2016)
PMID: 27594682 DOI: 10.1016/j.str.2016.07.012

Abstact

Peroxiredoxins (Prxs) are ubiquitous cysteine-based peroxidases that guard cells against oxidative damage, are virulence factors for pathogens, and are involved in eukaryotic redox regulatory pathways. We have analyzed catalytically active crystals to capture atomic resolution snapshots of a PrxQ subfamily enzyme (from Xanthomonas campestris) proceeding through thiolate, sulfenate, and sulfinate species. These analyses provide structures of unprecedented accuracy for seeding theoretical studies, and reveal conformational intermediates giving insight into the reaction pathway. Based on a highly non-standard geometry seen for the sulfenate intermediate, we infer that the sulfenate formation itself can strongly promote local unfolding of the active site to enhance productive catalysis. Further, these structures reveal that preventing local unfolding, in this case via crystal contacts, results in facile hyperoxidative inactivation even for Prxs normally resistant to such inactivation. This supports previous proposals that conformation-specific inhibitors may be useful for achieving selective inhibition of Prxs that are drug targets.

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