5IMT image
Deposition Date 2016-03-06
Release Date 2016-08-24
Last Version Date 2024-10-23
Entry Detail
PDB ID:
5IMT
Keywords:
Title:
Toxin receptor complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Intermedilysin
Gene (Uniprot):ily
Chain IDs:A
Chain Length:534
Number of Molecules:1
Biological Source:Streptococcus intermedius
Polymer Type:polypeptide(L)
Molecule:CD59 glycoprotein
Gene (Uniprot):CD59
Chain IDs:B (auth: D)
Chain Length:77
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structural Basis for Receptor Recognition by the Human CD59-Responsive Cholesterol-Dependent Cytolysins.
Structure 24 1488 1498 (2016)
PMID: 27499440 DOI: 10.1016/j.str.2016.06.017

Abstact

Cholesterol-dependent cytolysins (CDCs) are a family of pore-forming toxins that punch holes in the outer membrane of eukaryotic cells. Cholesterol serves as the receptor, but a subclass of CDCs first binds to human CD59. Here we describe the crystal structures of vaginolysin and intermedilysin complexed to CD59. These studies, together with small-angle X-ray scattering, reveal that CD59 binds to each at different, though overlapping, sites, consistent with molecular dynamics simulations and binding studies. The CDC consensus undecapeptide motif, which for the CD59-responsive CDCs has a proline instead of a tryptophan in the motif, adopts a strikingly different conformation between the structures; our data suggest that the proline acts as a selectivity switch to ensure CD59-dependent CDCs bind their protein receptor first in preference to cholesterol. The structural data suggest a detailed model of how these water-soluble toxins assemble as prepores on the cell surface.

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Primary Citation of related structures