5IM3 image
Deposition Date 2016-03-05
Release Date 2016-05-04
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5IM3
Keywords:
Title:
Crystal structure of the class I ribonucleotide reductase from Pseudomonas aeruginosa in complex with dATP
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ribonucleoside-diphosphate reductase
Gene (Uniprot):nrdA
Chain IDs:A, B
Chain Length:963
Number of Molecules:2
Biological Source:Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
Primary Citation
Structural Mechanism of Allosteric Activity Regulation in a Ribonucleotide Reductase with Double ATP Cones.
Structure 24 906 917 (2016)
PMID: 27133024 DOI: 10.1016/j.str.2016.03.025

Abstact

Ribonucleotide reductases (RNRs) reduce ribonucleotides to deoxyribonucleotides. Their overall activity is stimulated by ATP and downregulated by dATP via a genetically mobile ATP cone domain mediating the formation of oligomeric complexes with varying quaternary structures. The crystal structure and solution X-ray scattering data of a novel dATP-induced homotetramer of the Pseudomonas aeruginosa class I RNR reveal the structural bases for its unique properties, namely one ATP cone that binds two dATP molecules and a second one that is non-functional, binding no nucleotides. Mutations in the observed tetramer interface ablate oligomerization and dATP-induced inhibition but not the ability to bind dATP. Sequence analysis shows that the novel type of ATP cone may be widespread in RNRs. The present study supports a scenario in which diverse mechanisms for allosteric activity regulation are gained and lost through acquisition and evolutionary erosion of different types of ATP cone.

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