5IHL image
Entry Detail
PDB ID:
5IHL
Title:
STRUCTURE OF THE EXTRACELLULAR DOMAIN OF THE CD40 IN COMPLEX WITH 3H56-5 DAB
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2016-02-29
Release Date:
2016-06-01
Method Details:
Experimental Method:
Resolution:
3.30 Å
R-Value Free:
0.29
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tumor necrosis factor receptor superfamily member 5
Mutations:Protein produced with Asn 153 & Asn 180, but deglycosylated with PNGase F, which leaves Asp at those positions
Chain IDs:A, C (auth: D), E (auth: F), G (auth: H)
Chain Length:183
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:3H56-5 domain antibody (dAb)
Chain IDs:B, D (auth: E), F (auth: G), H (auth: I)
Chain Length:121
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Functional Antagonism of Human CD40 Achieved by Targeting a Unique Species-Specific Epitope.
J.Mol.Biol. 428 2860 2879 (2016)
PMID: 27216500 DOI: 10.1016/j.jmb.2016.05.014

Abstact

Current clinical anti-CD40 biologic agents include both antagonist molecules for the treatment of autoimmune diseases and agonist molecules for immuno-oncology, yet the relationship between CD40 epitope and these opposing biological outcomes is not well defined. This report describes the identification of potent antagonist domain antibodies (dAbs) that bind to a novel human CD40-specific epitope that is divergent in the CD40 of nonhuman primates. A similarly selected anti-cynomolgus CD40 dAb recognizing the homologous epitope is also a potent antagonist. Mutagenesis, biochemical, and X-ray crystallography studies demonstrate that the epitope is distinct from that of CD40 agonists. Both the human-specific and cynomolgus-specific molecules remain pure antagonists even when formatted as bivalent Fc-fusion proteins, making this an attractive therapeutic format for targeting hCD40 in autoimmune indications.

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Primary Citation of related structures