5IES image
Entry Detail
PDB ID:
5IES
Title:
Crystal structure of VRC01c-HuGL2 Fab from an HIV-1 naive donor in complex with with a germline-targeting gp120 engineered outer domain eOD-GT8 at 2.16 A
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2016-02-25
Release Date:
2016-04-06
Method Details:
Experimental Method:
Resolution:
2.16 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Germline-targeting HIV-1 gp120 engineered outer domain eOD-GT8
Chain IDs:C
Chain Length:183
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:VRC01cHuGL2 Fab heavy chain
Chain IDs:A (auth: H)
Chain Length:221
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:VRC01cHuGL2 Fab light chain
Chain IDs:B (auth: L)
Chain Length:216
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
HIV-1 broadly neutralizing antibody precursor B cells revealed by germline-targeting immunogen.
Science 351 1458 1463 (2016)
PMID: 27013733 DOI: 10.1126/science.aad9195

Abstact

Induction of broadly neutralizing antibodies (bnAbs) is a major HIV vaccine goal. Germline-targeting immunogens aim to initiate bnAb induction by activating bnAb germline precursor B cells. Critical unmet challenges are to determine whether bnAb precursor naïve B cells bind germline-targeting immunogens and occur at sufficient frequency in humans for reliable vaccine responses. Using deep mutational scanning and multitarget optimization, we developed a germline-targeting immunogen (eOD-GT8) for diverse VRC01-class bnAbs. We then used the immunogen to isolate VRC01-class precursor naïve B cells from HIV-uninfected donors. Frequencies of true VRC01-class precursors, their structures, and their eOD-GT8 affinities support this immunogen as a candidate human vaccine prime. These methods could be applied to germline targeting for other classes of HIV bnAbs and for Abs to other pathogens.

Legend

Protein

Chemical

Disease

Primary Citation of related structures