5IAZ image
Deposition Date 2016-02-22
Release Date 2016-08-10
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5IAZ
Keywords:
Title:
The C-terminal domain of rice beta-galactosidase 1
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
25
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:beta-galactosidase 1
Gene (Uniprot):OsI_10152
Chain IDs:A
Chain Length:122
Number of Molecules:1
Biological Source:Oryza sativa subsp. indica
Ligand Molecules
Primary Citation
Structure of a plant beta-galactosidase C-terminal domain
Biochim.Biophys.Acta 1864 1411 1418 (2016)
PMID: 27451952 DOI: 10.1016/j.bbapap.2016.07.005

Abstact

Most plant β-galactosidases, which belong to glycoside hydrolase family 35, have a C-terminal domain homologous to animal galactose and rhamnose-binding lectins. To investigate the structure and function of this domain, the C-terminal domain of the rice (Oryza sativa L.) β-galactosidase 1 (OsBGal1 Cter) was expressed in Escherichia coli and purified to homogeneity. The free OsBGal1 Cter is monomeric with a native molecular weight of 15kDa. NMR spectroscopy indicated that OsBGal1 Cter comprises five β-strands and one α-helix. The structure of this domain is similar to lectin domains from animals, but loops A and C of OsBGal1 Cter are longer than the corresponding loops from related animal lectins with known structures. In addition, loop A of OsBGal1 Cter was not well defined, suggesting it is flexible. Although OsBGal1 Cter was predicted to be a galactose/rhamnose-binding domain, binding with rhamnose, galactose, glucose, β-1,4-d-galactobiose and raffinose could not be observed in NMR experiments.

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Primary Citation of related structures
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