5I90 image
Deposition Date 2016-02-19
Release Date 2016-05-11
Last Version Date 2024-03-06
Entry Detail
PDB ID:
5I90
Keywords:
Title:
Crystal Structure of PvdN from Pseudomonas Aeruginosa
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.22 Å
R-Value Free:
0.15
R-Value Work:
0.13
R-Value Observed:
0.14
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PvdN
Gene (Uniprot):pvdN
Mutagens:N2D
Chain IDs:A, B
Chain Length:427
Number of Molecules:2
Biological Source:Pseudomonas aeruginosa
Primary Citation
1.2 angstrom resolution crystal structure of the periplasmic aminotransferase PvdN from Pseudomonas aeruginosa.
Acta Crystallogr F Struct Biol Commun 72 403 408 (2016)
PMID: 27139833 DOI: 10.1107/S2053230X16006257

Abstact

The Gram-negative pathogen Pseudomonas aeruginosa uses a nonribosomal peptide synthetase (NRPS) biosynthetic cluster for the production of a peptide siderophore. In addition to four multimodular NRPS proteins, the biosynthetic pathway also requires several additional enzymes involved in the production of nonproteinogenic amino acids and maturation of the peptide product. Among the proteins that are required for the final steps in pyoverdine synthesis is PvdN, a pyridoxal phosphate-dependent enzyme that catalyzes an uncharacterized step in pyoverdine production. This study reports the high-resolution structure of PvdN bound to a PLP cofactor solved by multi-wavelength anomalous dispersion (MAD). The PvdN model shows high structural homology to type I aspartate aminotransferases and also contains positive density that suggests an uncharacterized external aldimine.

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Primary Citation of related structures
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