5I8H image
Entry Detail
PDB ID:
5I8H
Keywords:
Title:
Crystal Structure of HIV-1 BG505 SOSIP.664 Prefusion Env Trimer in Complex with V3 Loop-targeting Antibody PGT122 Fab and Fusion Peptide-targeting Antibody VRC34.01 Fab
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2016-02-18
Release Date:
2016-05-25
Method Details:
Experimental Method:
Resolution:
4.30 Å
R-Value Free:
0.30
R-Value Work:
0.28
R-Value Observed:
0.28
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:BG505 SOSIP.664 gp120
Chain IDs:A, C
Chain Length:481
Number of Molecules:2
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:BG505 SOSIP.664 gp41
Chain IDs:B, H (auth: D)
Chain Length:153
Number of Molecules:2
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:VRC34.01 Fab heavy chain
Chain IDs:E, G
Chain Length:223
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:VRC34.01 Fab light chain
Chain IDs:F, I (auth: H)
Chain Length:212
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:PGT122 Fab heavy chain
Chain IDs:J (auth: I), L (auth: K)
Chain Length:235
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:PGT122 Fab light chain
Chain IDs:D (auth: L), K (auth: J)
Chain Length:210
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation

Abstact

The HIV-1 fusion peptide, comprising 15 to 20 hydrophobic residues at the N terminus of the Env-gp41 subunit, is a critical component of the virus-cell entry machinery. Here, we report the identification of a neutralizing antibody, N123-VRC34.01, which targets the fusion peptide and blocks viral entry by inhibiting conformational changes in gp120 and gp41 subunits of Env required for entry. Crystal structures of N123-VRC34.01 liganded to the fusion peptide, and to the full Env trimer, revealed an epitope consisting of the N-terminal eight residues of the gp41 fusion peptide and glycan N88 of gp120, and molecular dynamics showed that the N-terminal portion of the fusion peptide can be solvent-exposed. These results reveal the fusion peptide to be a neutralizing antibody epitope and thus a target for vaccine design.

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Primary Citation of related structures