5I5N image
Deposition Date 2016-02-15
Release Date 2016-08-17
Last Version Date 2024-03-20
Entry Detail
PDB ID:
5I5N
Keywords:
Title:
Crystal Structure of N-terminal Domain of Matrix Protein of Thogoto Virus at Acidic pH.
Biological Source:
Source Organism:
Thogoto virus (Taxon ID: 11569)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.42 Å
R-Value Free:
0.18
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Matrix protein
Chain IDs:A, B
Chain Length:154
Number of Molecules:2
Biological Source:Thogoto virus
Primary Citation
pH-dependent conformational changes of a Thogoto virus matrix protein reveal mechanisms of viral assembly and uncoating
J.Gen.Virol. 97 2149 2156 (2016)
PMID: 27411929 DOI: 10.1099/jgv.0.000551

Abstact

Orthomyxoviruses are a family of ssRNA virus, including influenza virus, infectious salmon anaemia virus and Thogoto virus. The matrix proteins of orthomyxoviruses play crucial roles in some essential processes of the viral life cycle. However, the mechanisms of the matrix proteins involved in these processes remain incompletely understood. Currently, only the structure and function of the matrix protein from influenza virus have been studied. Here, we present the crystal structures of the N-terminal domain of matrix protein from Thogoto virus at pH 7.0 and 4.5. By analysing the structures, we identified the conformational changes of monomers and dimers in different pH conditions, mainly caused by two flexible loops, L3 and L5. These structural deviations would reflect the basis of viral capsid assembly or disassembly.

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Primary Citation of related structures