5I3L image
Deposition Date 2016-02-10
Release Date 2016-02-24
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5I3L
Title:
DPF3b in complex with H3K14ac peptide
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Zinc finger protein DPF3
Gene (Uniprot):DPF3
Chain IDs:A, B
Chain Length:115
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:H3K14ac peptide
Chain IDs:C
Chain Length:21
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
Crystal structure of DPF3b in complex with an acetylated histone peptide.
J.Struct.Biol. 195 365 372 (2016)
PMID: 27402533 DOI: 10.1016/j.jsb.2016.07.001

Abstact

Histone acetylation plays an important role in chromatin dynamics and is associated with active gene transcription. This modification is written by acetyltransferases, erased by histone deacetylases and read out by bromodomain containing proteins, and others such as tandem PHD fingers of DPF3b. Here we report the high resolution crystal structure of the tandem PHD fingers of DPF3b in complex with an H3K14ac peptide. In the complex structure, the histone peptide adopts an α-helical conformation, unlike previously observed by NMR, but similar to a previously reported MOZ-H3K14ac complex structure. Our crystal structure adds to existing evidence that points to the α-helix as a natural conformation of histone tails as they interact with histone-associated proteins.

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Primary Citation of related structures