5I1T image
Entry Detail
PDB ID:
5I1T
Keywords:
Title:
2.6 Angstrom Resolution Crystal Structure of Stage II Sporulation Protein D (SpoIID) from Clostridium difficile in Complex with Triacetylchitotriose
Biological Source:
PDB Version:
Deposition Date:
2016-02-05
Release Date:
2016-05-25
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Stage II sporulation protein D
Chain IDs:A
Chain Length:330
Number of Molecules:1
Biological Source:Peptoclostridium difficile (strain 630)
Peptide-like Molecules
PRD_900017
Primary Citation
Crystal Structures of the SpoIID Lytic Transglycosylases Essential for Bacterial Sporulation.
J.Biol.Chem. 291 14915 14926 (2016)
PMID: 27226615 DOI: 10.1074/jbc.M116.729749

Abstact

Bacterial spores are the most resistant form of life known on Earth and represent a serious problem for (i) bioterrorism attack, (ii) horizontal transmission of microbial pathogens in the community, and (iii) persistence in patients and in a nosocomial environment. Stage II sporulation protein D (SpoIID) is a lytic transglycosylase (LT) essential for sporulation. The LT superfamily is a potential drug target because it is active in essential bacterial processes involving the peptidoglycan, which is unique to bacteria. However, the absence of structural information for the sporulation-specific LT enzymes has hindered mechanistic understanding of SpoIID. Here, we report the first crystal structures with and without ligands of the SpoIID family from two community relevant spore-forming pathogens, Bacillus anthracis and Clostridium difficile. The structures allow us to visualize the overall architecture, characterize the substrate recognition model, identify critical residues, and provide the structural basis for catalysis by this new family of enzymes.

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