5I0F image
Deposition Date 2016-02-03
Release Date 2016-12-14
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5I0F
Title:
Cycloalternan-degrading enzyme from Trueperella pyogenes in complex with covalent intermediate
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.16
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glycoside hydrolase family 31
Chain IDs:A (auth: B)
Chain Length:733
Number of Molecules:1
Biological Source:Trueperella pyogenes
Primary Citation
Transferase Versus Hydrolase: The Role of Conformational Flexibility in Reaction Specificity.
Structure 25 295 304 (2017)
PMID: 28089449 DOI: 10.1016/j.str.2016.12.007

Abstact

Active in the aqueous cellular environment where a massive excess of water is perpetually present, enzymes that catalyze the transfer of an electrophile to a non-water nucleophile (transferases) require specific strategies to inhibit mechanistically related hydrolysis reactions. To identify principles that confer transferase versus hydrolase reaction specificity, we exploited two enzymes that use highly similar catalytic apparatuses to catalyze the transglycosylation (a transferase reaction) or hydrolysis of α-1,3-glucan linkages in the cyclic tetrasaccharide cycloalternan (CA). We show that substrate binding to non-catalytic domains and a conformationally stable active site promote CA transglycosylation, whereas a distinct pattern of active site conformational change is associated with CA hydrolysis. These findings defy the classic view of induced-fit conformational change and illustrate a mechanism by which a stable hydrophobic binding site can favor transferase activity and disfavor hydrolysis. Application of these principles could facilitate the rational reengineering of transferases with desired catalytic properties.

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Primary Citation of related structures
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