5I01 image
Deposition Date 2016-02-03
Release Date 2016-02-17
Last Version Date 2023-09-27
Entry Detail
PDB ID:
5I01
Keywords:
Title:
Structure of phosphoheptose isomerase GmhA from Neisseria gonorrhoeae
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.37 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phosphoheptose isomerase
Gene (Uniprot):gmhA
Mutagens:T2A
Chain IDs:A, B, C, D
Chain Length:204
Number of Molecules:4
Biological Source:Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
Ligand Molecules
Primary Citation
Functional and structural studies on the Neisseria gonorrhoeae GmhA, the first enzyme in the glycero-manno-heptose biosynthesis pathways, demonstrate a critical role in lipooligosaccharide synthesis and gonococcal viability.
Microbiologyopen 6 ? ? (2017)
PMID: 28063198 DOI: 10.1002/mbo3.432

Abstact

Sedoheptulose-7-phosphate isomerase, GmhA, is the first enzyme in the biosynthesis of nucleotide-activated-glycero-manno-heptoses and an attractive, yet underexploited, target for development of broad-spectrum antibiotics. We demonstrated that GmhA homologs in Neisseria gonorrhoeae and N. meningitidis (hereafter called GmhAGC and GmhANM , respectively) were interchangeable proteins essential for lipooligosaccharide (LOS) synthesis, and their depletion had adverse effects on neisserial viability. In contrast, the Escherichia coli ortholog failed to complement GmhAGC depletion. Furthermore, we showed that GmhAGC is a cytoplasmic enzyme with induced expression at mid-logarithmic phase, upon iron deprivation and anaerobiosis, and conserved in contemporary gonococcal clinical isolates including the 2016 WHO reference strains. The untagged GmhAGC crystallized as a tetramer in the closed conformation with four zinc ions in the active site, supporting that this is most likely the catalytically active conformation of the enzyme. Finally, site-directed mutagenesis studies showed that the active site residues E65 and H183 were important for LOS synthesis but not for GmhAGC function in bacterial viability. Our studies bring insights into the importance and mechanism of action of GmhA and may ultimately facilitate targeting the enzyme with small molecule inhibitors.

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Primary Citation of related structures
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