5HYC image
Deposition Date 2016-02-01
Release Date 2017-02-01
Last Version Date 2023-11-08
Entry Detail
PDB ID:
5HYC
Title:
Structure based function annotation of a hypothetical protein MGG_01005 related to the development of rice blast fungus
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
I 41 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Uncharacterized protein
Gene (Uniprot):MGG_01005
Chain IDs:A, B
Chain Length:161
Number of Molecules:2
Biological Source:Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytoplasmic dynein 1 intermediate chain 2
Gene (Uniprot):MGG_04771
Chain IDs:C
Chain Length:35
Number of Molecules:1
Biological Source:Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
Primary Citation
Structure based function-annotation of hypothetical protein MGG_01005 from Magnaporthe oryzae reveals it is the dynein light chain orthologue of dynlt1/3.
Sci Rep 8 3952 3952 (2018)
PMID: 29500373 DOI: 10.1038/s41598-018-21667-5

Abstact

Magnaporthe oryzae is a model fungal plant pathogen employed for studying plant-fungi interactions. Whole genome sequencing and bioinformatics analyses revealed that this fungal pathogen has more than 12,000 protein-coding genes with 65% of the genes remaining functionally un-annotated. Here, we determine the structure of the hypothetical protein, MGG_01005 and show that it is the Magnaporthe oryzae Dynein light chain Tctex-type 1 (dynlt1/3), demonstrated by its structural similarity to other orthologous dynlt1 proteins and its conserved interaction with the N-terminus of the Magnaporthe oryzae dynein intermediate chain, MoDyn1I2. In addition, we present the structure of the MGG_01005-MoDyn1I2 complex together with mutagenesis studies that reveals a di-histidine motif interaction with a glutamate residue in the dynein intermediate chain within a conserved molecular interface. These results demonstrate the utility of structure-based annotation and validate it as a viable approach for the molecular assignment of hypothetic proteins from phyto-pathogenic fungi.

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Primary Citation of related structures