5HXV image
Deposition Date 2016-01-31
Release Date 2016-07-27
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5HXV
Keywords:
Title:
The crystal structure of thermostable xylanase mutant
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Endo-1,4-beta-xylanase
Gene (Uniprot):xylC
Mutations:S35C N44H Y61M T62C N63L D65P N66G T101P S102N
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:190
Number of Molecules:12
Biological Source:Talaromyces cellulolyticus CF-2612
Primary Citation
Construction of Thermophilic Xylanase and Its Structural Analysis
Biochemistry 55 4399 4409 (2016)
PMID: 27410423 DOI: 10.1021/acs.biochem.6b00414

Abstact

The glycoside hydrolase family 11 xylanase has been utilized in a wide variety of industrial applications, from food processing to kraft pulp bleaching. Thermostability enhances the economic value of industrial enzymes by making them more robust. Recently, we determined the crystal structure of an endo-β-1,4-xylanase (GH11) from mesophilic Talaromyces cellulolyticus, named XylC. Ligand-free XylC exists to two conformations (open and closed forms). We found that the "closed" structure possessed an unstable region within the N-terminal region far from the active site. In this study, we designed the thermostable xylanase by the structure-based site-directed mutagenesis on the N-terminal region. In total, nine mutations (S35C, N44H, Y61M, T62C, N63L, D65P, N66G, T101P, and S102N) and an introduced disulfide bond of the enzyme contributed to the improvement in thermostability. By combining the mutations, we succeeded in constructing a mutant for which the melting temperature was partially additively increased by >20 °C (measured by differential scanning calorimetry) and the activity was additively enhanced at elevated temperatures, without loss of the original specific activity. The crystal structure of the most thermostable mutant was determined at 2.0 Å resolution to elucidate the structural basis of thermostability. From the crystal structure of the mutant, it was revealed that the formation of a disulfide bond induces new C-C contacts and a conformational change in the N-terminus. The resulting induced conformational change in the N-terminus is key for stabilizing this region and for constructing thermostable mutants without compromising the activity.

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