ISDA: 5HVY

Deposition Date 2016-01-28

Release Date 2016-04-20

Last Version Date 2024-03-06

Entry Detail

PDB ID:

5HVY

Keywords:

Transferase/Transcription

Title:

CDK8/CYCC IN COMPLEX WITH COMPOUND 20

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.39 Å

R-Value Free:

0.22

R-Value Work:

0.18

R-Value Observed:

0.18

Space Group:

P 21 21 21

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cyclin-dependent kinase 8
Gene (Uniprot):CDK8
Chain IDs:A
Chain Length:406
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P49336 Pfam ID:PF00069 EC:2.7.11.22

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cyclin-C
Gene (Uniprot):CCNC
Chain IDs:B
Chain Length:287
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P24863 Pfam ID:PF00134, PF16899

Ligand Molecules

66X

FMT

Primary Citation

Design and Development of a Series of Potent and Selective Type II Inhibitors of CDK8.

Bergeron, P, Koehler, M.F, Blackwood, E.M, Bowman, K, Clark, K, Firestein, R, Kiefer, J.R, Maskos, K, McCleland, M.L, Orren, L, Ramaswamy, S, Salphati, L, Schmidt, S, Schneider, E.V, Wu, J, Beresini, M.Show

Acs Med.Chem.Lett. 7 595 600 (2016)

PMID: 27326333 DOI: 10.1021/acsmedchemlett.6b00044

Abstact

Using Sorafenib as a starting point, a series of potent and selective inhibitors of CDK8 was developed. When cocrystallized with CDK8 and cyclin C, these compounds exhibit a Type-II (DMG-out) binding mode.

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Primary Citation of related structures