5HRT image
Deposition Date 2016-01-24
Release Date 2016-04-06
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5HRT
Keywords:
Title:
Crystal structure of mouse autotaxin in complex with a DNA aptamer
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ectonucleotide pyrophosphatase/phosphodiesterase family member 2
Gene (Uniprot):Enpp2
Chain IDs:A
Chain Length:831
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polydeoxyribonucleotide
Molecule:modified DNA (34-MER)
Chain IDs:B
Chain Length:34
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structural basis for specific inhibition of Autotaxin by a DNA aptamer
Nat.Struct.Mol.Biol. 23 395 401 (2016)
PMID: 27043297 DOI: 10.1038/nsmb.3200

Abstact

ATX is a plasma lysophospholipase D that hydrolyzes lysophosphatidylcholine (LPC) and produces lysophosphatidic acid. To date, no ATX-inhibition-mediated treatment strategies for human diseases have been established. Here, we report anti-ATX DNA aptamers that inhibit ATX with high specificity and efficacy. We solved the crystal structure of ATX in complex with the anti-ATX aptamer RB011, at 2.0-Å resolution. RB011 binds in the vicinity of the active site through base-specific interactions, thus preventing the access of the choline moiety of LPC substrates. Using the structural information, we developed the modified anti-ATX DNA aptamer RB014, which exhibited in vivo efficacy in a bleomycin-induced pulmonary fibrosis mouse model. Our findings reveal the structural basis for the specific inhibition of ATX by the anti-ATX aptamer and highlight the therapeutic potential of anti-ATX aptamers for the treatment of human diseases, such as pulmonary fibrosis.

Legend

Protein

Chemical

Disease

Primary Citation of related structures