ISDA: 5HRI

Deposition Date 2016-01-23

Release Date 2017-01-18

Last Version Date 2023-11-08

Entry Detail

PDB ID:

5HRI

Keywords:

TRANSFERASE/DNA

Title:

The crystal structure of AsfvPolX:DNA1 binary complex

Biological Source:

Source Organism:

African swine fever virus (Taxon ID: 10497)
synthetic construct (Taxon ID: 32630)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.20 Å

R-Value Free:

0.25

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 21 21 2

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA polymerase beta-like protein
Chain IDs:A, B
Chain Length:178
Number of Molecules:2
Biological Source:African swine fever virus

UniProt ID:P42494 Pfam ID:PF01909, PF14791

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*CP*GP*TP*TP*CP*TP*AP*TP*CP*TP*GP*TP*AP*CP*TP*CP*AP*C)-3'
Chain IDs:C, F
Chain Length:18
Number of Molecules:2
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*GP*TP*GP*AP*GP*TP*AP*CP*A)-3')
Chain IDs:D, G
Chain Length:9
Number of Molecules:2
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*TP*AP*GP*AP*AP*CP*G)-3')
Chain IDs:E, H
Chain Length:8
Number of Molecules:2
Biological Source:synthetic construct

Ligand Molecules

DGT

Primary Citation

The crystal structure of AsfvPolX: 1nt-gap(P) DNA1: dGTP ternary complex.

Chen, Y.Q, Zhang, J, Gan, J.H.Show

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