ISDA: 5HRH

Deposition Date 2016-01-23

Release Date 2017-01-18

Last Version Date 2024-03-20

Entry Detail

PDB ID:

5HRH

Keywords:

TRANSFERASE/DNA

Title:

The crystal structure of AsfvPolX(H115F/R127A mutant): 1nt-gap(P) DNA2:dGTP ternary complex

Biological Source:

Source Organism:

African swine fever virus (Taxon ID: 10497)
synthetic construct (Taxon ID: 32630)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.00 Å

R-Value Free:

0.27

R-Value Work:

0.23

R-Value Observed:

0.23

Space Group:

P 21 21 2

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA polymerase beta-like protein
Mutagens:H115F, R127A
Chain IDs:A, E (auth: B)
Chain Length:178
Number of Molecules:2
Biological Source:African swine fever virus

UniProt ID:P42494 Pfam ID:PF01909, PF14791

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*CP*GP*TP*TP*CP*TP*AP*TP*GP*TP*GP*TP*AP*CP*TP*CP*AP*C)-3')
Chain IDs:B (auth: C), F
Chain Length:18
Number of Molecules:2
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*GP*TP*GP*AP*GP*TP*AP*CP*A*)-3')
Chain IDs:C (auth: D), G
Chain Length:9
Number of Molecules:2
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*TP*AP*GP*AP*AP*CP*G)-3')
Chain IDs:D (auth: E), H
Chain Length:8
Number of Molecules:2
Biological Source:synthetic construct

Ligand Molecules

DGT

Primary Citation

The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1

Chen, Y.Q, Zhang, J, Gan, J.H.Show

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