5HR3 image
Entry Detail
PDB ID:
5HR3
Keywords:
Title:
Crystal structure of thioredoxin N106A mutant
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2016-01-22
Release Date:
2017-02-22
Method Details:
Experimental Method:
Resolution:
1.10 Å
R-Value Free:
0.16
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Thioredoxin
Mutations:N106A
Chain IDs:A, B
Chain Length:109
Number of Molecules:2
Biological Source:Escherichia coli
Primary Citation
Structural variability of E. coli thioredoxin captured in the crystal structures of single-point mutants.
Sci Rep 7 42343 42343 (2017)
PMID: 28181556 DOI: 10.1038/srep42343

Abstact

Thioredoxin is a ubiquitous small protein that catalyzes redox reactions of protein thiols. Additionally, thioredoxin from E. coli (EcTRX) is a widely-used model for structure-function studies. In a previous paper, we characterized several single-point mutants of the C-terminal helix (CTH) that alter global stability of EcTRX. However, spectroscopic signatures and enzymatic activity for some of these mutants were found essentially unaffected. A comprehensive structural characterization at the atomic level of these near-invariant mutants can provide detailed information about structural variability of EcTRX. We address this point through the determination of the crystal structures of four point-mutants, whose mutations occurs within or near the CTH, namely L94A, E101G, N106A and L107A. These structures are mostly unaffected compared with the wild-type variant. Notably, the E101G mutant presents a large region with two alternative traces for the backbone of the same chain. It represents a significant shift in backbone positions. Enzymatic activity measurements and conformational dynamics studies monitored by NMR and molecular dynamic simulations show that E101G mutation results in a small effect in the structural features of the protein. We hypothesize that these alternative conformations represent samples of the native-state ensemble of EcTRX, specifically the magnitude and location of conformational heterogeneity.

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