ISDA

Deposition Date 2016-01-16

Release Date 2016-04-06

Last Version Date 2024-03-06

Entry Detail

PDB ID:

5HMI

Keywords:

ligase/ligase inhibitor

Title:

HDM2 in complex with a 3,3-Disubstituted Piperidine

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.74 Å

R-Value Free:

0.22

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 21 21 21

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase Mdm2
Gene (Uniprot):MDM2
Mutations:F55Y, Y76H
Chain IDs:A, B
Chain Length:104
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:Q00987 Pfam ID:PF02201 EC:2.3.2.27

Ligand Molecules

62T

SO4

Primary Citation

Discovery of Novel 3,3-Disubstituted Piperidines as Orally Bioavailable, Potent, and Efficacious HDM2-p53 Inhibitors.

Bogen, S.L, Pan, W, Gibeau, C.R, Lahue, B.R, Ma, Y, Nair, L.G, Seigel, E, Shipps, G.W, Tian, Y, Wang, Y, Lin, Y, Liu, M, Liu, S, Mirza, A, Wang, X, Lipari, P, Seidel-Dugan, C, Hicklin, D.J, Bishop, W.R, Rindgen, D, Nomeir, A, Prosise, W, Reichert, P, Scapin, G, Strickland, C, Doll, R.J.Show

Acs Med.Chem.Lett. 7 324 329 (2016)

PMID: 26985323 DOI: 10.1021/acsmedchemlett.5b00472

Abstact

A new subseries of substituted piperidines as p53-HDM2 inhibitors exemplified by 21 has been developed from the initial lead 1. Research focused on optimization of a crucial HDM2 Trp23-ligand interaction led to the identification of 2-(trifluoromethyl)thiophene as the preferred moiety. Further investigation of the Leu26 pocket resulted in potent, novel substituted piperidine inhibitors of the HDM2-p53 interaction that demonstrated tumor regression in several human cancer xenograft models in mice. The structure of HDM2 in complex with inhibitors 3, 10, and 21 is described.

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Primary Citation of related structures