5HLG image
Deposition Date 2016-01-15
Release Date 2017-01-25
Last Version Date 2023-11-08
Entry Detail
PDB ID:
5HLG
Title:
Structure of reduced AbfR bound to DNA
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:MarR family transcriptional regulator
Chain IDs:I (auth: A), J (auth: B), K (auth: C), L (auth: D), M (auth: E), N (auth: F), O (auth: G), P (auth: H)
Chain Length:148
Number of Molecules:8
Biological Source:Staphylococcus epidermidis
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*TP*AP*AP*CP*TP*CP*AP*AP*TP*CP*GP*CP*GP*CP*GP*CP*GP*AP*TP*TP*GP*AP*GP*T)-3')
Chain IDs:A (auth: I), B (auth: J), C (auth: K), D (auth: L), E (auth: M), F (auth: N), G (auth: O), H (auth: P)
Chain Length:24
Number of Molecules:8
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Structural Insights into the Redox-Sensing Mechanism of MarR-Type Regulator AbfR.
J. Am. Chem. Soc. 139 1598 1608 (2017)
PMID: 28086264 DOI: 10.1021/jacs.6b11438

Abstact

As a master redox-sensing MarR-family transcriptional regulator, AbfR participates in oxidative stress responses and virulence regulations in Staphylococcus epidermidis. Here, we present structural insights into the DNA-binding mechanism of AbfR in different oxidation states by determining the X-ray crystal structures of a reduced-AbfR/DNA complex, an overoxidized (Cys13-SO2H and Cys13-SO3H) AbfR/DNA, and 2-disulfide cross-linked AbfR dimer. Together with biochemical analyses, our results suggest that the redox regulation of AbfR-sensing displays two novel features: (i) the reversible disulfide modification, but not the irreversible overoxidation, significantly abolishes the DNA-binding ability of the AbfR repressor; (ii) either 1-disulfide cross-linked or 2-disulfide cross-linked AbfR dimer is biologically significant. The overoxidized species of AbfR, resembling the reduced AbfR in conformation and retaining the DNA-binding ability, does not exist in biologically significant concentrations, however. The 1-disulfide cross-linked modification endows AbfR with significantly weakened capability for DNA-binding. The 2-disulfide cross-linked AbfR adopts a very "open" conformation that is incompatible with DNA-binding. Overall, the concise oxidation chemistry of the redox-active cysteine allows AbfR to sense and respond to oxidative stress correctly and efficiently.

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Primary Citation of related structures