5HK5 image
Deposition Date 2016-01-13
Release Date 2016-08-24
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5HK5
Keywords:
Title:
Structure of the Grem2-GDF5 Inhibitory Complex
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.28
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
P 21 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Growth/differentiation factor 5
Gene (Uniprot):GDF5
Chain IDs:E (auth: A), F (auth: B), G (auth: C), H (auth: D)
Chain Length:120
Number of Molecules:4
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Gremlin-2
Gene (Uniprot):Grem2
Chain IDs:A (auth: E), B (auth: F), C (auth: G), D (auth: H)
Chain Length:147
Number of Molecules:4
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structure of Gremlin-2 in Complex with GDF5 Gives Insight into DAN-Family-Mediated BMP Antagonism.
Cell Rep 16 2077 2086 (2016)
PMID: 27524626 DOI: 10.1016/j.celrep.2016.07.046

Abstact

The DAN family, including Gremlin-1 and Gremlin-2 (Grem1 and Grem2), represents a large family of secreted BMP (bone morphogenetic protein) antagonists. However, how DAN proteins specifically inhibit BMP signaling has remained elusive. Here, we report the structure of Grem2 bound to GDF5 at 2.9-Å resolution. The structure reveals two Grem2 dimers binding perpendicularly to each GDF5 monomer, resembling an H-like structure. Comparison to the unbound Grem2 structure reveals a dynamic N terminus that undergoes significant transition upon complex formation, leading to simultaneous interaction with the type I and type II receptor motifs on GDF5. Binding studies show that DAN-family members can interact with BMP-type I receptor complexes, whereas Noggin outcompetes the type I receptor for ligand binding. Interestingly, Grem2-GDF5 forms a stable aggregate-like structure in vitro that is not clearly observed for other antagonists, including Noggin and Follistatin. These findings exemplify the structural and functional diversity across the various BMP antagonist families.

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Primary Citation of related structures