ISDA

Deposition Date 2016-01-07

Release Date 2016-03-30

Last Version Date 2024-03-06

Entry Detail

PDB ID:

5HG1

Keywords:

TRANSFERASE/TRANSFERASE INHIBITOR

Title:

Crystal Structure of Human Hexokinase 2 with cmpd 1, a C-2-substituted glucosamine

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.76 Å

R-Value Free:

0.26

R-Value Work:

0.21

R-Value Observed:

0.22

Space Group:

P 31 2 1

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Hexokinase-2
Gene (Uniprot):HK2
Chain IDs:A
Chain Length:922
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P52789 Pfam ID:PF00349, PF03727 EC:2.7.1.1

Ligand Molecules

62C

BG6

FLC

Primary Citation

Discovery of a Novel 2,6-Disubstituted Glucosamine Series of Potent and Selective Hexokinase 2 Inhibitors.

Lin, H, Zeng, J, Xie, R, Schulz, M.J, Tedesco, R, Qu, J, Erhard, K.F, Mack, J.F, Raha, K, Rendina, A.R, Szewczuk, L.M, Kratz, P.M, Jurewicz, A.J, Cecconie, T, Martens, S, McDevitt, P.J, Martin, J.D, Chen, S.B, Jiang, Y, Nickels, L, Schwartz, B.J, Smallwood, A, Zhao, B, Campobasso, N, Qian, Y, Briand, J, Rominger, C.M, Oleykowski, C, Hardwicke, M.A, Luengo, J.I.Show

Acs Med.Chem.Lett. 7 217 222 (2016)

PMID: 26985301 DOI: 10.1021/acsmedchemlett.5b00214

Abstact

A novel series of potent and selective hexokinase 2 (HK2) inhibitors, 2,6-disubstituted glucosamines, has been identified based on HTS hits, exemplified by compound 1. Inhibitor-bound crystal structures revealed that the HK2 enzyme could adopt an "induced-fit" conformation. The SAR study led to the identification of potent HK2 inhibitors, such as compound 34 with greater than 100-fold selectivity over HK1. Compound 25 inhibits in situ glycolysis in a UM-UC-3 bladder tumor cell line via (13)CNMR measurement of [3-(13)C]lactate produced from [1,6-(13)C2]glucose added to the cell culture.

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Primary Citation of related structures