5HAV image
Deposition Date 2015-12-31
Release Date 2016-01-13
Last Version Date 2023-09-27
Entry Detail
PDB ID:
5HAV
Keywords:
Title:
Sperm whale myoglobin mutant L29H F33Y F43H (F33Y CuBMb) with oxygen bound
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.27 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Myoglobin
Gene (Uniprot):MB
Mutagens:L29H F33Y F43H
Chain IDs:A
Chain Length:153
Number of Molecules:1
Biological Source:Physeter catodon
Primary Citation
Spectroscopic and Crystallographic Evidence for the Role of a Water-Containing H-Bond Network in Oxidase Activity of an Engineered Myoglobin.
J.Am.Chem.Soc. 138 1134 1137 (2016)
PMID: 26716352 DOI: 10.1021/jacs.5b12004

Abstact

Heme-copper oxidases (HCOs) catalyze efficient reduction of oxygen to water in biological respiration. Despite progress in studying native enzymes and their models, the roles of non-covalent interactions in promoting this activity are still not well understood. Here we report EPR spectroscopic studies of cryoreduced oxy-F33Y-CuBMb, a functional model of HCOs engineered in myoglobin (Mb). We find that cryoreduction at 77 K of the O2-bound form, trapped in the conformation of the parent oxyferrous form, displays a ferric-hydroperoxo EPR signal, in contrast to the cryoreduced oxy-wild-type (WT) Mb, which is unable to deliver a proton and shows a signal from the peroxo-ferric state. Crystallography of oxy-F33Y-CuBMb reveals an extensive H-bond network involving H2O molecules, which is absent from oxy-WTMb. This H-bonding proton-delivery network is the key structural feature that transforms the reversible oxygen-binding protein, WTMb, into F33Y-CuBMb, an oxygen-activating enzyme that reduces O2 to H2O. These results provide direct evidence of the importance of H-bond networks involving H2O in conferring enzymatic activity to a designed protein. Incorporating such extended H-bond networks in designing other metalloenzymes may allow us to confer and fine-tune their enzymatic activities.

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