5H5Q image
Deposition Date 2016-11-09
Release Date 2016-12-07
Last Version Date 2023-11-15
Entry Detail
PDB ID:
5H5Q
Title:
Crystal structure of human GPX4 in complex with GXpep-1
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.10 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Phospholipid hydroperoxide glutathione peroxidase, mitochondrial
Gene (Uniprot):GPX4
Mutations:C29S, C37A, C64S, U73C, C93R, C102S, C134E, C175V
Chain IDs:A
Chain Length:169
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:GXpep-1
Chain IDs:B
Chain Length:15
Number of Molecules:1
Biological Source:Enterobacteria phage T7
Ligand Molecules
Primary Citation
Discovery of GPX4 inhibitory peptides from random peptide T7 phage display and subsequent structural analysis
Biochem. Biophys. Res. Commun. 482 195 201 (2017)
PMID: 27836545 DOI: 10.1016/j.bbrc.2016.11.035

Abstact

The phospholipid hydroperoxidase glutathione peroxidase (GPX4) is an enzyme that reduces lipid hydroperoxides in lipid membranes. Recently, GPX4 has been investigated as a target molecule that induces iron-dependent cell death (ferroptosis) selectively in cancer cells that express mutant Ras. GPX4 inhibitors have the potential to become novel anti-cancer drugs. However, there are no druggable pockets for conventional small molecules on the molecular surface of GPX4. To generate GPX4 inhibitors, we examined the use of peptides as an alternative to small molecules. By screening peptide libraries displayed on T7 phages, and analyzing the X-ray crystal structures of the peptides, we successfully identified one peptide that binds to near Sec73 of catalytic site and two peptides that bind to another site on GPX4. To our knowledge, this is the first study reporting GPX4 inhibitory peptides and their structural information.

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Primary Citation of related structures