5H3D image
Entry Detail
PDB ID:
5H3D
Title:
Helical structure of membrane tubules decorated by ACAP1 (BARPH doamin) protein by cryo-electron microscopy and MD simulation
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2016-10-22
Release Date:
2019-01-16
Method Details:
Experimental Method:
Resolution:
14.00 Å
Aggregation State:
HELICAL ARRAY
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1
Chain IDs:A, B, C, D
Chain Length:382
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
ACAP1 assembles into an unusual protein lattice for membrane deformation through multiple stages.
Plos Comput.Biol. 15 e1007081 e1007081 (2019)
PMID: 31291238 DOI: 10.1371/journal.pcbi.1007081

Abstact

Studies on the Bin-Amphiphysin-Rvs (BAR) domain have advanced a fundamental understanding of how proteins deform membrane. We previously showed that a BAR domain in tandem with a Pleckstrin Homology (PH domain) underlies the assembly of ACAP1 (Arfgap with Coil-coil, Ankryin repeat, and PH domain I) into an unusual lattice structure that also uncovers a new paradigm for how a BAR protein deforms membrane. Here, we initially pursued computation-based refinement of the ACAP1 lattice to identify its critical protein contacts. Simulation studies then revealed how ACAP1, which dimerizes into a symmetrical structure in solution, is recruited asymmetrically to the membrane through dynamic behavior. We also pursued electron microscopy (EM)-based structural studies, which shed further insight into the dynamic nature of the ACAP1 lattice assembly. As ACAP1 is an unconventional BAR protein, our findings broaden the understanding of the mechanistic spectrum by which proteins assemble into higher-ordered structures to achieve membrane deformation.

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Primary Citation of related structures