5H32 image
Deposition Date 2016-10-20
Release Date 2016-11-30
Last Version Date 2024-05-29
Entry Detail
PDB ID:
5H32
Title:
Cryo-EM structure of zika virus complexed with Fab C10 at pH 5.0
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Zika virus (Taxon ID: 64320)
Host Organism:
Method Details:
Experimental Method:
Resolution:
12.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:structural protein E
Chain IDs:A, B (auth: C), C (auth: B)
Chain Length:403
Number of Molecules:3
Biological Source:Zika virus
Polymer Type:polypeptide(L)
Molecule:C10 IgG heavy chain variable region
Chain IDs:D (auth: G), F (auth: K), H (auth: I)
Chain Length:127
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:C10 IgG light chain variable region
Chain IDs:E (auth: H), G (auth: L), I (auth: M)
Chain Length:109
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Neutralization mechanism of a highly potent antibody against Zika virus
Nat Commun 7 13679 13679 (2016)
PMID: 27882950 DOI: 10.1038/ncomms13679

Abstact

The rapid spread of Zika virus (ZIKV), which causes microcephaly and Guillain-Barré syndrome, signals an urgency to identify therapeutics. Recent efforts to rescreen dengue virus human antibodies for ZIKV cross-neutralization activity showed antibody C10 as one of the most potent. To investigate the ability of the antibody to block fusion, we determined the cryoEM structures of the C10-ZIKV complex at pH levels mimicking the extracellular (pH8.0), early (pH6.5) and late endosomal (pH5.0) environments. The 4.0 Å resolution pH8.0 complex structure shows that the antibody binds to E proteins residues at the intra-dimer interface, and the virus quaternary structure-dependent inter-dimer and inter-raft interfaces. At pH6.5, antibody C10 locks all virus surface E proteins, and at pH5.0, it locks the E protein raft structure, suggesting that it prevents the structural rearrangement of the E proteins during the fusion event-a vital step for infection. This suggests antibody C10 could be a good therapeutic candidate.

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Primary Citation of related structures