5H0R image
Deposition Date 2016-10-06
Release Date 2017-01-25
Last Version Date 2025-06-25
Entry Detail
PDB ID:
5H0R
Keywords:
Title:
RNA dependent RNA polymerase ,vp4,dsRNA
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RNA-dependent RNA polymerase
Gene (Uniprot):RdRp
Chain IDs:A (auth: F)
Chain Length:1225
Number of Molecules:1
Biological Source:Bombyx mori cytoplasmic polyhedrosis virus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:VP4 protein
Chain IDs:B (auth: G)
Chain Length:561
Number of Molecules:1
Biological Source:Dendrolimus punctatus cypovirus 1
Polymer Type:polyribonucleotide
Molecule:RNA (42-MER)
Chain IDs:C (auth: H)
Chain Length:42
Number of Molecules:1
Biological Source:Cypovirus
Polymer Type:polyribonucleotide
Molecule:RNA (42-MER)
Chain IDs:D (auth: I)
Chain Length:42
Number of Molecules:1
Biological Source:Cypovirus
Ligand Molecules
Primary Citation
Near-Atomic Resolution Structure Determination of a Cypovirus Capsid and Polymerase Complex Using Cryo-EM at 200kV
J. Mol. Biol. 429 79 87 (2017)
PMID: 27914893 DOI: 10.1016/j.jmb.2016.11.025

Abstact

Single-particle cryo-electron microscopy (cryo-EM) allows the high-resolution structural determination of biological assemblies in a near-native environment. However, all high-resolution (better than 3.5Å) cryo-EM structures reported to date were obtained by using 300kV transmission electron microscopes (TEMs). We report here the structures of a cypovirus capsid of 750-Å diameter at 3.3-Å resolution and of RNA-dependent RNA polymerase (RdRp) complexes within the capsid at 3.9-Å resolution using a 200-kV TEM. The newly resolved structure revealed conformational changes of two subdomains in the RdRp. These conformational changes, which were involved in RdRp's switch from non-transcribing to transcribing mode, suggest that the RdRp may facilitate the unwinding of genomic double-stranded RNA. The possibility of 3-Å resolution structural determinations for biological assemblies of relatively small sizes using cryo-EM at 200kV was discussed.

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Disease

Primary Citation of related structures