5GOR image
Entry Detail
PDB ID:
5GOR
Keywords:
Title:
Crystal structure of alkaline invertase InvA from Anabaena sp. PCC 7120
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2016-07-28
Release Date:
2016-11-02
Method Details:
Experimental Method:
Resolution:
2.67 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Alkaline Invertase
Chain IDs:A, B, C, D, E, F
Chain Length:476
Number of Molecules:6
Biological Source:Nostoc sp. PCC 7120
Primary Citation
Structural Analysis of the Catalytic Mechanism and Substrate Specificity of Anabaena Alkaline Invertase InvA Reveals a Novel Glucosidase
J. Biol. Chem. 291 25667 25677 (2016)
PMID: 27777307 DOI: 10.1074/jbc.M116.759290

Abstact

Invertases catalyze the hydrolysis of sucrose to glucose and fructose, thereby playing a key role in primary metabolism and plant development. According to the optimum pH, invertases are classified into acid invertases (Ac-Invs) and alkaline/neutral invertases (A/N-Invs), which share no sequence homology. Compared with Ac-Invs that have been extensively studied, the structure and catalytic mechanism of A/N-Invs remain unknown. Here we report the crystal structures of Anabaena alkaline invertase InvA, which was proposed to be the ancestor of modern plant A/N-Invs. These structures are the first in the GH100 family. InvA exists as a hexamer in both crystal and solution. Each subunit consists of an (α/α)6 barrel core structure in addition to an insertion of three helices. A couple of structures in complex with the substrate or products enabled us to assign the subsites -1 and +1 specifically binding glucose and fructose, respectively. Structural comparison combined with enzymatic assays indicated that Asp-188 and Glu-414 are putative catalytic residues. Further analysis of the substrate binding pocket demonstrated that InvA possesses a stringent substrate specificity toward the α1,2-glycosidic bond of sucrose. Together, we suggest that InvA and homologs represent a novel family of glucosidases.

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