5GNJ image
Deposition Date 2016-07-21
Release Date 2017-05-10
Last Version Date 2024-03-20
Entry Detail
PDB ID:
5GNJ
Title:
Structure of a transcription factor and DNA complex
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.27
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Transcription factor MYC2
Gene (Uniprot):MYC2
Chain IDs:A (auth: G), B (auth: I), E (auth: A), F (auth: B), I (auth: E), J (auth: F), M, N
Chain Length:89
Number of Molecules:8
Biological Source:Arabidopsis thaliana
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*AP*GP*GP*AP*AP*CP*AP*CP*GP*TP*GP*AP*CP*CP*C)-3')
Chain IDs:C (auth: K), G (auth: C), K (auth: H), O
Chain Length:15
Number of Molecules:4
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*TP*GP*GP*GP*TP*CP*AP*CP*GP*TP*GP*TP*TP*CP*C)-3')
Chain IDs:D (auth: L), H (auth: D), L (auth: J), P
Chain Length:15
Number of Molecules:4
Biological Source:synthetic construct
Primary Citation
Crystal Structure of Tetrameric Arabidopsis MYC2 Reveals the Mechanism of Enhanced Interaction with DNA.
Cell Rep 19 1334 1342 (2017)
PMID: 28514654 DOI: 10.1016/j.celrep.2017.04.057

Abstact

Jasmonates (JAs) are essential plant hormones that play important roles in the regulation of plant growth and the response to environmental stress. In the JA signaling pathway, the core transcription factors are a class of basic helix-loop-helix (bHLH) proteins, including MYC2, MYC3, and MYC4, that have different regulatory capacities. Here, we report the 2.7 Å crystal structure of the MYC2 bHLH domain complexed with G-box DNA, showing a cis-tetrameric structure. Biochemical assays confirmed that full-length MYC2 forms a stable homo-tetramer both in solution and in DNA-bound states, whereas MYC3 forms only a homodimer. Isothermal titration calorimetry (ITC) assays demonstrated that tetramerization enhanced DNA binding affinity, and fluorescence resonance energy transfer (FRET) assay indicated DNA looping potential of tetrameric MYC2. Luciferase assay further confirmed the importance of tetramerization in transcriptional regulation. Our studies provide a mechanistic explanation for the regulatory differences of MYC transcription factors.

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Primary Citation of related structures