5GNE image
Deposition Date 2016-07-20
Release Date 2017-08-30
Last Version Date 2024-10-09
Entry Detail
PDB ID:
5GNE
Keywords:
Title:
Crystal structure of LapB from Legionella pneumophila
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 42 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Leucine aminopeptidase
Gene (Uniprot):lpg0032
Chain IDs:A, B
Chain Length:375
Number of Molecules:2
Biological Source:Legionella pneumophila
Primary Citation
Crystal Structure and Biochemical Characterization of an Aminopeptidase LapB from Legionella pneumophila.
J. Agric. Food Chem. 65 7569 7578 (2017)
PMID: 28776986 DOI: 10.1021/acs.jafc.7b02849

Abstact

Aminopeptidases are a group of exopeptidases that catalyze the removal of a wide range of N-terminal amino acid residues from peptides and proteins. They have many important commercial applications in the food industry. We determined the crystal structure of an aminopeptidase LapB from Legionella pneumophila. The overall structure reveals that the N-terminal protease-associated (PA) domain presents a new fold and shields the active site cavity of the conserved C-terminal peptidase domain. The steady-state kinetic analysis of LapB and the PA domain deletion mutant indicate that the PA domain inhibited enzyme activity of the peptidase domain. Interestingly, the activity of LapB was largely increased by various organic solvents such as ethanol, propanol, and methanol at the concentration of 60% (v/v). CD analysis provided evidence that organic solvents induce the PA domain conformational changes that eliminate the inhibition role. The unique properties indicate the application potential of LapB in the food processing industry.

Legend

Protein

Chemical

Disease

Primary Citation of related structures