5GL0 image
Deposition Date 2016-07-07
Release Date 2016-08-24
Last Version Date 2024-03-27
Entry Detail
PDB ID:
5GL0
Title:
Structure of RyR1 in a closed state (C4 conformer)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ryanodine receptor 1
Gene (Uniprot):RYR1
Chain IDs:A, C, E, G
Chain Length:5037
Number of Molecules:4
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:Peptidyl-prolyl cis-trans isomerase FKBP1A
Gene (Uniprot):FKBP1A
Chain IDs:B, D, F, H
Chain Length:108
Number of Molecules:4
Biological Source:Oryctolagus cuniculus
Ligand Molecules
Primary Citation
The Central domain of RyR1 is the transducer for long-range allosteric gating of channel opening
Cell Res. 26 995 1006 (2016)
PMID: 27468892 DOI: 10.1038/cr.2016.89

Abstact

The ryanodine receptors (RyRs) are intracellular calcium channels responsible for rapid release of Ca(2+) from the sarcoplasmic/endoplasmic reticulum (SR/ER) to the cytoplasm, which is essential for the excitation-contraction (E-C) coupling of cardiac and skeletal muscles. The near-atomic resolution structure of closed RyR1 revealed the molecular details of this colossal channel, while the long-range allosteric gating mechanism awaits elucidation. Here, we report the cryo-EM structures of rabbit RyR1 in three closed conformations at about 4 Å resolution and an open state at 5.7 Å. Comparison of the closed RyR1 structures shows a breathing motion of the cytoplasmic platform, while the channel domain and its contiguous Central domain remain nearly unchanged. Comparison of the open and closed structures shows a dilation of the S6 tetrahelical bundle at the cytoplasmic gate that leads to channel opening. During the pore opening, the cytoplasmic "O-ring" motif of the channel domain and the U-motif of the Central domain exhibit coupled motion, while the Central domain undergoes domain-wise displacement. These structural analyses provide important insight into the E-C coupling in skeletal muscles and identify the Central domain as the transducer that couples the conformational changes of the cytoplasmic platform to the gating of the central pore.

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