5GJS image
Deposition Date 2016-07-01
Release Date 2016-12-07
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5GJS
Keywords:
Title:
Crystal structure of H1 hemagglutinin from A/California/04/2009 in complex with a neutralizing antibody 3E1
Biological Source:
Source Organism:
Influenza A virus (Taxon ID: 641501)
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.30
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Gene (Uniprot):HA
Mutations:G212C, R227C
Chain IDs:A
Chain Length:329
Number of Molecules:1
Biological Source:Influenza A virus
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Gene (Uniprot):HA
Chain IDs:B
Chain Length:182
Number of Molecules:1
Biological Source:Influenza A virus
Polymer Type:polypeptide(L)
Molecule:heavy chain of human neutralizing antibody 3E1
Chain IDs:D (auth: H)
Chain Length:222
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:light chain of human neutralizing antibody 3E1
Chain IDs:C (auth: L)
Chain Length:214
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Human antibody 3E1 targets the HA stem region of H1N1 and H5N6 influenza A viruses
Nat Commun 7 13577 13577 (2016)
PMID: 27910950 DOI: 10.1038/ncomms13577

Abstact

As influenza A viruses remain a major threat to human health worldwide, the discovery of broadly neutralizing monoclonal antibodies that recognize conserved epitopes would facilitate the development of antibody-based therapeutic strategies. Here we report that a VH4-4-encoded human mAb named 3E1 could neutralize H1 and H5 subtype viruses in vitro and protect mice against the H1N1 and H5N6 viruses by inhibiting the low pH-induced conformational rearrangement of haemagglutinin (HA), hence blocking membrane fusion. The crystal structures of 3E1 Fab in complex with HA of two H1N1 strains reveal that 3E1, with both heavy and light chains, binds to a conserved epitope of the HA stem region, comprising parts of the fusion peptide, the F subdomain and the outermost β-strand preceding helix A. Altogether, these data suggest the potential of 3E1 as a therapeutic drug against H1 and H5 subtype viruses.

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Primary Citation of related structures