5GIZ image
Entry Detail
PDB ID:
5GIZ
Title:
Periplasmic heme-binding protein BhuT in apo form
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2016-06-26
Release Date:
2017-06-28
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Putative hemin transport system, substrate-binding protein
Chain IDs:A, B
Chain Length:271
Number of Molecules:2
Biological Source:Burkholderia cenocepacia J2315
Primary Citation
Structural basis for binding and transfer of heme in bacterial heme-acquisition systems.
Proteins 85 2217 2230 (2017)
PMID: 28913898 DOI: 10.1002/prot.25386

Abstact

Periplasmic heme-binding proteins (PBPs) in Gram-negative bacteria are components of the heme acquisition system. These proteins shuttle heme across the periplasmic space from outer membrane receptors to ATP-binding cassette (ABC) heme importers located in the inner-membrane. In the present study, we characterized the structures of PBPs found in the pathogen Burkholderia cenocepacia (BhuT) and in the thermophile Roseiflexus sp. RS-1 (RhuT) in the heme-free and heme-bound forms. The conserved motif, in which a well-conserved Tyr interacts with the nearby Arg coordinates on heme iron, was observed in both PBPs. The heme was recognized by its surroundings in a variety of manners including hydrophobic interactions and hydrogen bonds, which was confirmed by isothermal titration calorimetry. Furthermore, this study of 3 forms of BhuT allowed the first structural comparison and showed that the heme-binding cleft of BhuT adopts an "open" state in the heme-free and 2-heme-bound forms, and a "closed" state in the one-heme-bound form with unique conformational changes. Such a conformational change might adjust the interaction of the heme(s) with the residues in PBP and facilitate the transfer of the heme into the translocation channel of the importer.

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Primary Citation of related structures