5GIE image
Deposition Date 2016-06-23
Release Date 2016-12-07
Last Version Date 2024-03-20
Entry Detail
PDB ID:
5GIE
Keywords:
Title:
Crystal structure of VDR in complex with DLAM-4P (P21 form)
Biological Source:
Source Organism:
Rattus norvegicus (Taxon ID: 10116)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.39 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Vitamin D3 receptor
Gene (Uniprot):Vdr
Chain IDs:A, C (auth: D)
Chain Length:256
Number of Molecules:2
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Molecule:SRC1
Chain IDs:B (auth: C), D (auth: E)
Chain Length:10
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Regulation of the vitamin D receptor by vitamin D lactam derivatives.
Febs Lett. 590 3270 3279 (2016)
PMID: 27500498 DOI: 10.1002/1873-3468.12348

Abstact

The active metabolite of vitamin D3 , 1α,25-dihydroxyvitamin D3 , acts as a ligand for the vitamin D receptor (VDR) and activates VDR-mediated gene expression. Recently, we characterized 1α,25-dihydroxyvitamin D3 -26,23-lactams (DLAMs), which mimic vitamin D3 metabolites, as noncalcemic VDR ligands that barely activate the receptor. In this study, we present structural insights onto the regulation of VDR function by DLAMs. X-ray crystallographic analysis revealed that DLAMs induced a large conformational change in the loop region between helices H6 and H7 in the VDR ligand-binding domain. Our structural analysis suggests that targeting of the loop region may be a new mode of VDR regulation.

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Primary Citation of related structures