5GAQ image
Deposition Date 2016-01-05
Release Date 2016-04-06
Last Version Date 2024-05-15
Entry Detail
PDB ID:
5GAQ
Keywords:
Title:
Cryo-EM structure of the Lysenin Pore
Biological Source:
Source Organism:
Eisenia fetida (Taxon ID: 6396)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Lysenin
Chain IDs:A, B, C, D, E, F, G, H, I
Chain Length:310
Number of Molecules:9
Biological Source:Eisenia fetida
Ligand Molecules
Primary Citation
Cryo-EM structure of lysenin pore elucidates membrane insertion by an aerolysin family protein
Nat Commun 7 11293 11293 (2016)
PMID: 27048994 DOI: 10.1038/ncomms11293

Abstact

Lysenin from the coelomic fluid of the earthworm Eisenia fetida belongs to the aerolysin family of small β-pore-forming toxins (β-PFTs), some members of which are pathogenic to humans and animals. Despite efforts, a high-resolution structure of a channel for this family of proteins has been elusive and therefore the mechanism of activation and membrane insertion remains unclear. Here we determine the pore structure of lysenin by single particle cryo-EM, to 3.1 Å resolution. The nonameric assembly reveals a long β-barrel channel spanning the length of the complex that, unexpectedly, includes the two pre-insertion strands flanking the hypothetical membrane-insertion loop. Examination of other members of the aerolysin family reveals high structural preservation in this region, indicating that the membrane-insertion pathway in this family is conserved. For some toxins, proteolytic activation and pro-peptide removal will facilitate unfolding of the pre-insertion strands, allowing them to form the β-barrel of the channel.

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Chemical

Disease

Primary Citation of related structures
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