5G5M image
Deposition Date 2016-05-26
Release Date 2017-06-21
Last Version Date 2024-01-10
Entry Detail
PDB ID:
5G5M
Keywords:
Title:
Structure of the Pyrococcus Furiosus Esterase Pf2001 with space group P21
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.07 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ESTERASE
Gene (Uniprot):PF2001
Chain IDs:A, B
Chain Length:275
Number of Molecules:2
Biological Source:PYROCOCCUS FURIOSUS
Ligand Molecules
Primary Citation
Structural Mechanism for the Temperature-Dependent Activation of the Hyperthermophilic Pf2001 Esterase.
Structure 26 199 208.e3 (2018)
PMID: 29307486 DOI: 10.1016/j.str.2017.12.004

Abstact

Lipases and esterases constitute a group of enzymes that catalyze the hydrolysis or synthesis of ester bonds. A major biotechnological interest corresponds to thermophilic esterases, due to their intrinsic stability at high temperatures. The Pf2001 esterase from Pyrococcus furiosus reaches its optimal activity between 70°C and 80°C. The crystal structure of the Pf2001 esterase shows two different conformations: monomer and dimer. The structures reveal important rearrangements in the "cap" subdomain between monomer and dimer, by the formation of an extensive intertwined helical interface. Moreover, the dimer interface is essential for the formation of the hydrophobic channel for substrate selectivity, as confirmed by mutagenesis and kinetic analysis. We also provide evidence for dimer formation at high temperatures, a process that correlates with its enzymatic activation. Thus, we propose a temperature-dependent activation mechanism of the Pf2001 esterase via dimerization that is necessary for the substrate channel formation in the active-site cleft.

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