5G4Y image
Deposition Date 2016-05-18
Release Date 2017-03-29
Last Version Date 2024-01-10
Entry Detail
PDB ID:
5G4Y
Title:
Structural basis for carboxylic acid recognition by a Cache chemosensory domain.
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 64
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Methyl-accepting chemotaxis sensory transducer with Cache sensor
Chain IDs:A
Chain Length:179
Number of Molecules:1
Biological Source:Pseudomonas syringae
Ligand Molecules
Primary Citation
Structural basis for ligand recognition by a Cache chemosensory domain that mediates carboxylate sensing in Pseudomonas syringae.
Sci Rep 6 35198 35198 (2016)
PMID: 27734909 DOI: 10.1038/srep35198

Abstact

Chemoreceptors enable bacteria to detect chemical signals in the environment and navigate towards niches that are favourable for survival. The sensor domains of chemoreceptors function as the input modules for chemotaxis systems, and provide sensory specificity by binding specific ligands. Cache-like domains are the most common extracellular sensor module in prokaryotes, however only a handful have been functionally or structurally characterised. Here, we have characterised a chemoreceptor Cache-like sensor domain (PscD-SD) from the plant pathogen Pseudomonas syringae pv. actinidiae (Psa). High-throughput fluorescence thermal shift assays, combined with isothermal thermal titration calorimetry, revealed that PscD-SD binds specifically to C2 (glycolate and acetate) and C3 (propionate and pyruvate) carboxylates. We solved the structure of PscD-SD in complex with propionate using X-ray crystallography. The structure reveals the key residues that comprise the ligand binding pocket and dictate the specificity of this sensor domain for C2 and C3 carboxylates. We also demonstrate that all four carboxylate ligands are chemoattractants for Psa, but only two of these (acetate and pyruvate) are utilisable carbon sources. This result suggests that in addition to guiding the bacteria towards nutrients, another possible role for carboxylate sensing is in locating potential sites of entry into the host plant.

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Primary Citation of related structures