5G05 image
Deposition Date 2016-03-16
Release Date 2016-05-25
Last Version Date 2024-10-23
Entry Detail
PDB ID:
5G05
Keywords:
Title:
Cryo-EM structure of combined apo phosphorylated APC
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
BOS TAURUS (Taxon ID: 9913)
UNIDENTIFIED (Taxon ID: 32644)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ANAPHASE-PROMOTING COMPLEX SUBUNIT 1
Gene (Uniprot):ANAPC1
Chain IDs:A
Chain Length:1944
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:ANAPHASE-PROMOTING COMPLEX SUBUNIT 11
Gene (Uniprot):ANAPC11
Chain IDs:B
Chain Length:84
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:CELL DIVISION CYCLE PROTEIN 23 HOMOLOG
Gene (Uniprot):CDC23
Chain IDs:C, P
Chain Length:597
Number of Molecules:2
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:ANAPHASE-PROMOTING COMPLEX SUBUNIT 15
Gene (Uniprot):ANAPC15
Chain IDs:D
Chain Length:121
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:ANAPHASE-PROMOTING COMPLEX SUBUNIT 16
Gene (Uniprot):ANAPC16
Chain IDs:E
Chain Length:110
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:CELL DIVISION CYCLE PROTEIN 27 HOMOLOG
Gene (Uniprot):CDC27
Chain IDs:F, H
Chain Length:824
Number of Molecules:2
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:ANAPHASE-PROMOTING COMPLEX SUBUNIT CDC26
Gene (Uniprot):CDC26
Chain IDs:G, R (auth: W)
Chain Length:85
Number of Molecules:2
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:ANAPHASE-PROMOTING COMPLEX SUBUNIT 4
Gene (Uniprot):ANAPC4
Chain IDs:I
Chain Length:808
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:CELL DIVISION CYCLE PROTEIN 16 HOMOLOG
Gene (Uniprot):CDC16
Chain IDs:J, K
Chain Length:620
Number of Molecules:2
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:ANAPHASE-PROMOTING COMPLEX SUBUNIT 10
Gene (Uniprot):ANAPC10
Chain IDs:L
Chain Length:185
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:ANAPHASE-PROMOTING COMPLEX SUBUNIT 13
Gene (Uniprot):ANAPC13
Chain IDs:M
Chain Length:74
Number of Molecules:1
Biological Source:BOS TAURUS
Polymer Type:polypeptide(L)
Molecule:ANAPHASE-PROMOTING COMPLEX SUBUNIT 2
Gene (Uniprot):ANAPC2
Chain IDs:N
Chain Length:822
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:ANAPHASE-PROMOTING COMPLEX SUBUNIT 5
Gene (Uniprot):ANAPC5
Chain IDs:O
Chain Length:755
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:UNIDENTIFIED PEPTIDE
Chain IDs:Q (auth: T)
Chain Length:15
Number of Molecules:1
Biological Source:UNIDENTIFIED
Polymer Type:polypeptide(L)
Molecule:ANAPHASE-PROMOTING COMPLEX SUBUNIT 7
Gene (Uniprot):ANAPC7
Chain IDs:S (auth: X), T (auth: Y)
Chain Length:599
Number of Molecules:2
Biological Source:HOMO SAPIENS
Ligand Molecules
Primary Citation
Molecular Mechanism of Apc/C Activation by Mitotic Phosphorylation.
Nature 533 260 ? (2016)
PMID: 27120157 DOI: 10.1038/NATURE17973

Abstact

In eukaryotes, the anaphase-promoting complex (APC/C, also known as the cyclosome) regulates the ubiquitin-dependent proteolysis of specific cell-cycle proteins to coordinate chromosome segregation in mitosis and entry into the G1 phase. The catalytic activity of the APC/C and its ability to specify the destruction of particular proteins at different phases of the cell cycle are controlled by its interaction with two structurally related coactivator subunits, Cdc20 and Cdh1. Coactivators recognize substrate degrons, and enhance the affinity of the APC/C for its cognate E2 (refs 4-6). During mitosis, cyclin-dependent kinase (Cdk) and polo-like kinase (Plk) control Cdc20- and Cdh1-mediated activation of the APC/C. Hyperphosphorylation of APC/C subunits, notably Apc1 and Apc3, is required for Cdc20 to activate the APC/C, whereas phosphorylation of Cdh1 prevents its association with the APC/C. Since both coactivators associate with the APC/C through their common C-box and Ile-Arg tail motifs, the mechanism underlying this differential regulation is unclear, as is the role of specific APC/C phosphorylation sites. Here, using cryo-electron microscopy and biochemical analysis, we define the molecular basis of how phosphorylation of human APC/C allows for its control by Cdc20. An auto-inhibitory segment of Apc1 acts as a molecular switch that in apo unphosphorylated APC/C interacts with the C-box binding site and obstructs engagement of Cdc20. Phosphorylation of the auto-inhibitory segment displaces it from the C-box-binding site. Efficient phosphorylation of the auto-inhibitory segment, and thus relief of auto-inhibition, requires the recruitment of Cdk-cyclin in complex with a Cdk regulatory subunit (Cks) to a hyperphosphorylated loop of Apc3. We also find that the small-molecule inhibitor, tosyl-l-arginine methyl ester, preferentially suppresses APC/C(Cdc20) rather than APC/C(Cdh1), and interacts with the binding sites of both the C-box and Ile-Arg tail motifs. Our results reveal the mechanism for the regulation of mitotic APC/C by phosphorylation and provide a rationale for the development of selective inhibitors of this state.

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Primary Citation of related structures