5FYL image
Deposition Date 2016-03-08
Release Date 2016-04-27
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5FYL
Keywords:
Title:
Crystal Structure at 3.7 A Resolution of Fully Glycosylated HIV-1 Clade A BG505 SOSIP.664 Prefusion Env Trimer in Complex with Broadly Neutralizing Antibodies PGT122 and 35O22
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.30
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 63
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:BG505 GP120 ENV ECTODOMAIN
Gene (Uniprot):env
Mutagens:YES
Chain IDs:A (auth: B)
Chain Length:153
Number of Molecules:1
Biological Source:HUMAN IMMUNODEFICIENCY VIRUS 1
Polymer Type:polypeptide(L)
Molecule:35O22 ANTIBODY FAB HEAVY CHAIN
Chain IDs:B (auth: D)
Chain Length:243
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:35O22 ANTIBODY FAB LIGHT CHAIN
Chain IDs:C (auth: E)
Chain Length:216
Number of Molecules:1
Biological Source:HOMO SAPIENS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:BG505 GP120 ENV ECTODOMAIN
Gene (Uniprot):env
Mutagens:YES
Chain IDs:D (auth: G)
Chain Length:481
Number of Molecules:1
Biological Source:HUMAN IMMUNODEFICIENCY VIRUS 1
Polymer Type:polypeptide(L)
Molecule:PGT122 ANTIBODY FAB HEAVY CHAIN
Chain IDs:E (auth: H)
Chain Length:244
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:PGT122 ANTIBODY FAB LIGHT CHAIN
Chain IDs:F (auth: L)
Chain Length:213
Number of Molecules:1
Biological Source:HOMO SAPIENS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation

Abstact

The HIV-1-envelope (Env) trimer is covered by a glycan shield of ∼90 N-linked oligosaccharides, which comprises roughly half its mass and is a key component of HIV evasion from humoral immunity. To understand how antibodies can overcome the barriers imposed by the glycan shield, we crystallized fully glycosylated Env trimers from clades A, B, and G, visualizing the shield at 3.4-3.7 Å resolution. These structures reveal the HIV-1-glycan shield to comprise a network of interlocking oligosaccharides, substantially ordered by glycan crowding, that encase the protein component of Env and enable HIV-1 to avoid most antibody-mediated neutralization. The revealed features delineate a taxonomy of N-linked glycan-glycan interactions. Crowded and dispersed glycans are differently ordered, conserved, processed, and recognized by antibody. The structures, along with glycan-array binding and molecular dynamics, reveal a diversity in oligosaccharide affinity and a requirement for accommodating glycans among known broadly neutralizing antibodies that target the glycan-shielded trimer.

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Primary Citation of related structures