5FWW image
Deposition Date 2016-02-21
Release Date 2016-07-20
Last Version Date 2024-10-23
Entry Detail
PDB ID:
5FWW
Title:
Wnt modulator Kremen in complex with DKK1 (CRD2) and LRP6 (PE3PE4)
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Free:
0.35
R-Value Work:
0.32
R-Value Observed:
0.32
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 6
Gene (Uniprot):LRP6
Chain IDs:A
Chain Length:619
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:KREMEN PROTEIN 1
Gene (Uniprot):KREMEN1
Chain IDs:B
Chain Length:293
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:DICKKOPF-RELATED PROTEIN 1
Gene (Uniprot):DKK1
Chain IDs:C
Chain Length:85
Number of Molecules:1
Biological Source:HOMO SAPIENS
Ligand Molecules
Primary Citation
Structure of the Dual-Mode Wnt Regulator Kremen1 and Insight Into Ternary Complex Formation with Lrp6 and Dickkopf
Structure 24 1599 ? (2016)
PMID: 27524201 DOI: 10.1016/J.STR.2016.06.020

Abstact

Kremen 1 and 2 have been identified as co-receptors for Dickkopf (Dkk) proteins, hallmark secreted antagonists of canonical Wnt signaling. We present here three crystal structures of the ectodomain of human Kremen1 (KRM1ECD) at resolutions between 1.9 and 3.2 Å. KRM1ECD emerges as a rigid molecule with tight interactions stabilizing a triangular arrangement of its Kringle, WSC, and CUB structural domains. The structures reveal an unpredicted homology of the WSC domain to hepatocyte growth factor. We further report the general architecture of the ternary complex formed by the Wnt co-receptor Lrp5/6, Dkk, and Krm, determined from a low-resolution complex crystal structure between β-propeller/EGF repeats (PE) 3 and 4 of the Wnt co-receptor LRP6 (LRP6PE3PE4), the cysteine-rich domain 2 (CRD2) of DKK1, and KRM1ECD. DKK1CRD2 is sandwiched between LRP6PE3 and KRM1Kringle-WSC. Modeling studies supported by surface plasmon resonance suggest a direct interaction site between Krm1CUB and Lrp6PE2.

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Primary Citation of related structures