5FV2 image
Deposition Date 2016-02-02
Release Date 2016-02-17
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5FV2
Keywords:
Title:
Crystal structure of hVEGF in complex with VH domain antibody
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.45 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:VH DOMAIN ANTIBODY
Chain IDs:A, B, C
Chain Length:116
Number of Molecules:3
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:VASCULAR ENDOTHELIAL GROWTH FACTOR
Gene (Uniprot):VEGFA
Chain IDs:D (auth: V), E (auth: W), F (auth: X)
Chain Length:116
Number of Molecules:3
Biological Source:HOMO SAPIENS
Ligand Molecules
Primary Citation
Novel Interaction Mechanism of a Domain Antibody Based Inhibitor of Human Vascular Endothelial Growth Factor with Greater Potency Than Ranibizumab and Bevacizumab and Improved Capacity Over Aflibercept.
J.Biol.Chem. 291 5500 ? (2016)
PMID: 26728464 DOI: 10.1074/JBC.M115.691162

Abstact

A potent VEGF inhibitor with novel antibody architecture and antigen binding mode has been developed. The molecule, hereafter referred to as VEGF dual dAb (domain antibody), was evaluated in vitro for binding to VEGF and for potency in VEGF-driven models and compared with other anti-VEGF biologics that have been used in ocular anti-angiogenic therapeutic regimes. VEGF dual dAb is more potent than bevacizumab and ranibizumab for VEGF binding, inhibition of VEGF receptor binding assays (RBAs), and VEGF-driven in vitro models of angiogenesis and displays comparable inhibition to aflibercept (Eylea). VEGF dual dAb is dimeric, and each monomer contains two distinct anti-VEGF domain antibodies attached via linkers to a human IgG1 Fc domain. Mechanistically, the enhanced in vitro potency of VEGF dual dAb, in comparison to other anti-VEGF biologics, can be explained by increased binding stoichiometry. A consistent model of the target engagement has been built based on the x-ray complexes of each of the two isolated domain antibodies with the VEGF antigen.

Legend

Protein

Chemical

Disease

Primary Citation of related structures