5FQ5 image
Deposition Date 2015-12-07
Release Date 2016-03-23
Last Version Date 2024-05-08
Entry Detail
PDB ID:
5FQ5
Keywords:
Title:
Crystal structure of Cas9-sgRNA-DNA complex solved by native SAD phasing
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.14 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:SGRNA
Chain IDs:A
Chain Length:84
Number of Molecules:1
Biological Source:SYNTHETIC CONSTRUCT
Polymer Type:polypeptide(L)
Molecule:CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1
Gene (Uniprot):cas9
Mutations:YES
Chain IDs:B
Chain Length:1372
Number of Molecules:1
Biological Source:STREPTOCOCCUS PYOGENES
Polymer Type:polydeoxyribonucleotide
Molecule:TARGET DNA STRAND PROXIMAL FRAGMENT
Chain IDs:C
Chain Length:11
Number of Molecules:1
Biological Source:SYNTHETIC CONSTRUCT
Polymer Type:polydeoxyribonucleotide
Molecule:NON-TARGET DNA STRAND
Chain IDs:D
Chain Length:11
Number of Molecules:1
Biological Source:SYNTHETIC CONSTRUCT
Polymer Type:polydeoxyribonucleotide
Molecule:TARGET DNA STRAND DISTAL FRAGMENT
Chain IDs:E
Chain Length:17
Number of Molecules:1
Biological Source:SYNTHETIC CONSTRUCT
Primary Citation
Data-Collection Strategy for Challenging Native Sad Phasing.
Acta Crystallogr.,Sect.D 72 421 ? (2016)
PMID: 26960129 DOI: 10.1107/S2059798315024110

Abstact

Recent improvements in data-collection strategies have pushed the limits of native SAD (single-wavelength anomalous diffraction) phasing, a method that uses the weak anomalous signal of light elements naturally present in macromolecules. These involve the merging of multiple data sets from either multiple crystals or from a single crystal collected in multiple orientations at a low X-ray dose. Both approaches yield data of high multiplicity while minimizing radiation damage and systematic error, thus ensuring accurate measurements of the anomalous differences. Here, the combined use of these two strategies is described to solve cases of native SAD phasing that were particular challenges: the integral membrane diacylglycerol kinase (DgkA) with a low Bijvoet ratio of 1% and the large 200 kDa complex of the CRISPR-associated endonuclease (Cas9) bound to guide RNA and target DNA crystallized in the low-symmetry space group C2. The optimal native SAD data-collection strategy based on systematic measurements performed on the 266 kDa multiprotein/multiligand tubulin complex is discussed.

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Primary Citation of related structures