5FNV image
Deposition Date 2015-11-16
Release Date 2016-05-18
Last Version Date 2024-10-23
Entry Detail
PDB ID:
5FNV
Title:
a new complex structure of tubulin with an alpha-beta unsaturated lactone
Biological Source:
Source Organism:
GALLUS GALLUS (Taxon ID: 9031)
RATTUS NORVEGICUS (Taxon ID: 10116)
SUS SCROFA (Taxon ID: 9823)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.61 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:TUBULIN ALPHA-1B CHAIN
Gene (Uniprot):TUBA1B
Chain IDs:A, C
Chain Length:451
Number of Molecules:2
Biological Source:GALLUS GALLUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:TUBULIN BETA CHAIN
Chain IDs:B, D
Chain Length:445
Number of Molecules:2
Biological Source:RATTUS NORVEGICUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:STATHMIN-4
Gene (Uniprot):Stmn4
Chain IDs:E
Chain Length:143
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:TUBULIN TYROSINE LIGASE
Chain IDs:F
Chain Length:384
Number of Molecules:1
Biological Source:SUS SCROFA
Primary Citation
Pironetin Reacts Covalently with Cysteine-316 of Alpha-Tubulin to Destabilize Microtubule.
Nat.Commun. 7 12103 ? (2016)
PMID: 27357539 DOI: 10.1038/NCOMMS12103

Abstact

Molecules that alter the normal dynamics of microtubule assembly and disassembly include many anticancer drugs in clinical use. So far all such therapeutics target β-tubulin, and structural biology has explained the basis of their action and permitted design of new drugs. However, by shifting the profile of β-tubulin isoforms, cancer cells become resistant to treatment. Compounds that bind to α-tubulin are less well characterized and unexploited. The natural product pironetin is known to bind to α-tubulin and is a potent inhibitor of microtubule polymerization. Previous reports had identified that pironetin reacts with lysine-352 residue however analogues designed on this model had much lower potency, which was difficult to explain, hindering further development. We report crystallographic and mass spectrometric data that reveal that pironetin forms a covalent bond to cysteine-316 in α-tubulin via a Michael addition reaction. These data provide a basis for the rational design of α-tubulin targeting chemotherapeutics.

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Primary Citation of related structures