5FMN image
Deposition Date 2015-11-06
Release Date 2017-02-01
Last Version Date 2024-05-08
Entry Detail
PDB ID:
5FMN
Title:
The nickel-responsive transcriptional regulator InrS
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.28
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:INRS
Gene (Uniprot):sll0176
Chain IDs:A, B
Chain Length:107
Number of Molecules:2
Biological Source:SYNECHOCYSTIS SP. PCC 6803
Primary Citation
A tight tunable range for Ni(II) sensing and buffering in cells.
Nat. Chem. Biol. 13 409 414 (2017)
PMID: 28166209 DOI: 10.1038/nchembio.2310

Abstact

The metal affinities of metal-sensing transcriptional regulators co-vary with cellular metal concentrations over more than 12 orders of magnitude. To understand the cause of this relationship, we determined the structure of the Ni(II) sensor InrS and then created cyanobacteria (Synechocystis PCC 6803) in which transcription of genes encoding a Ni(II) exporter and a Ni(II) importer were controlled by InrS variants with weaker Ni(II) affinities. Variant strains were sensitive to elevated nickel and contained more nickel, but the increase was small compared with the change in Ni(II) affinity. All of the variant sensors retained the allosteric mechanism that inhibits DNA binding following metal binding, but a response to nickel in vivo was observed only when the sensitivity was set to respond in a relatively narrow (less than two orders of magnitude) range of nickel concentrations. Thus, the Ni(II) affinity of InrS is attuned to cellular metal concentrations rather than the converse.

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Primary Citation of related structures