5FKI image
Deposition Date 2015-10-16
Release Date 2016-03-16
Last Version Date 2024-10-23
Entry Detail
PDB ID:
5FKI
Keywords:
VIRAL PROTEIN
Title:
Pseudorabies virus (PrV) nuclear egress complex proteins fitted as a hexameric lattice into a sub-tomogram average derived from focused- ion beam milled lamellae electron cryo-microscopic data
Biological Source:
Source Organism:
Suid herpesvirus 1 (Taxon ID: 10345)
Host Organism:
Escherichia coli BL21(DE3)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
35.00 Å
Aggregation State:
CELL
Reconstruction Method:
TOMOGRAPHY
5FKI validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:UL31
Gene (Uniprot):UL31
Chain IDs:A (auth: 1A), C (auth: 1C), E (auth: 1E), G (auth: 1G), I (auth: 1I), K (auth: 1K), M (auth: 1M), O (auth: 1O), Q (auth: 1Q), S (auth: 1S), U (auth: 1U), W (auth: 1W), Y (auth: 1Y), AA (auth: 10), CA (auth: 12), EA (auth: 14), GA (auth: 16), IA (auth: 18), KA (auth: 2A), MA (auth: 2C), OA (auth: 2E), QA (auth: 2G), SA (auth: 2I), UA (auth: 2K), WA (auth: 2M), YA (auth: 2O), AB (auth: 2Q), CB (auth: 2S), EB (auth: 2U), GB (auth: 2W), IB (auth: 2Y), KB (auth: 20), MB (auth: 22), OB (auth: 24), QB (auth: 26), SB (auth: 28), UB (auth: 3A), WB (auth: 3C), YB (auth: 3E), AC (auth: 3G), CC (auth: 3I), EC (auth: 3K)
Chain Length:253
Number of Molecules:42
Biological Source:Suid herpesvirus 1
UniProt ID:G3G955 Pfam ID:PF02718
Protein Blast
Polymer Type:polypeptide(L)
Molecule:UL34 protein
Gene (Uniprot):UL34
Chain IDs:B (auth: 1B), D (auth: 1D), F (auth: 1F), H (auth: 1H), J (auth: 1J), L (auth: 1L), N (auth: 1N), P (auth: 1P), R (auth: 1R), T (auth: 1T), V (auth: 1V), X (auth: 1X), Z (auth: 1Z), BA (auth: 11), DA (auth: 13), FA (auth: 15), HA (auth: 17), JA (auth: 19), LA (auth: 2B), NA (auth: 2D), PA (auth: 2F), RA (auth: 2H), TA (auth: 2J), VA (auth: 2L), XA (auth: 2N), ZA (auth: 2P), BB (auth: 2R), DB (auth: 2T), FB (auth: 2V), HB (auth: 2X), JB (auth: 2Z), LB (auth: 21), NB (auth: 23), PB (auth: 25), RB (auth: 27), TB (auth: 29), VB (auth: 3B), XB (auth: 3D), ZB (auth: 3F), BC (auth: 3H), DC (auth: 3J), FC (auth: 3L)
Chain Length:179
Number of Molecules:42
Biological Source:Suid herpesvirus 1
UniProt ID:G3G8R3 Pfam ID:PF04541
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Ligand Molecules
CL
ZN
Primary Citation
Crystal Structure of the Herpesvirus Nuclear Egress Complex Provides Insights Into Inner Nuclear Membrane Remodelling
Cell Rep. 13 2645 2652 (2015)
PMID: 26711332 DOI: 10.1016/j.celrep.2015.11.008

Abstact

Although nucleo-cytoplasmic transport is typically mediated through nuclear pore complexes, herpesvirus capsids exit the nucleus via a unique vesicular pathway. Together, the conserved herpesvirus proteins pUL31 and pUL34 form the heterodimeric nuclear egress complex (NEC), which, in turn, mediates the formation of tight-fitting membrane vesicles around capsids at the inner nuclear membrane. Here, we present the crystal structure of the pseudorabies virus NEC. The structure revealed that a zinc finger motif in pUL31 and an extensive interaction network between the two proteins stabilize the complex. Comprehensive mutational analyses, characterized both in situ and in vitro, indicated that the interaction network is not redundant but rather complementary. Fitting of the NEC crystal structure into the recently determined cryoEM-derived hexagonal lattice, formed in situ by pUL31 and pUL34, provided details on the molecular basis of NEC coat formation and inner nuclear membrane remodeling.

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Primary Citation of related structures
5FKI